SNP Profiles of IMC 14   View Data

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 1234567891011121314
_Input profile
CCAGCGTTTTCCTTGTCCCCAAGGCTAA
1._GC-03-030-3-09
CCAGCGTTTTCCTTGTCCCCAAGGCTAA
2._GC-03-030-3-09
CCAGCGTTTTCCTTGTCCCCAAGGCTAA
3._GC-03-030-3-09
CCAGCGTTTTCCTTGTCCCCAAGGCTAA
4._GC-03-030-3-09
CCAGCGTTTTCCTTGTCCCCAAGGCTAA
5._IMC_14
CCAGCGTTTTCCTTGTCCCCAAGGCTAA
6._IMC_14
CCAGCGTTTTCCTTGTCCCCAAGGCTAA
7._IMC_14
CCAGCGTTTTCCTTGTCCCCAAGGCTAA
8._IMC_14
CCAGCGTTTTCCTTGTCCCCAAGGCTAA
9._GC-04-054-3-18
CCAGCGTTTTCCTTGTCCCCAAGGCTAA
10._GC-03-030-3-09
CCAGCGTTTTCCTTGTCCCCAAGGCTAA
11._GC-03-030-3-09
CCAGCGTTTTCCTTGTCCCCAAGGCTAA
12._IMC_14
CCAGCGTTTTCCTTGTCCCCAAGGCTAA
13._IMC_14
CCAGCGTTTTCCTTGTCCCCAAGGCTAA
14._IMC_14
CCAGCGTTTTCCTT_CCCCAAGGCTAA
15._IMC_14
CCAGCGTTTTCCTT_CCCCAAGGCTAA
16._GC-03-030-3-09
CCAGCGTTTTCCTT_CCCCAAGGCTAA
17._GC-03-030-3-09
CCAGCGTTTTCCTT_CCCCAAGGCTAA
18._IMC_14
CCAGCGTTTTCCTT_CCCCAAGGCTAA
19._GC-03-030-3-09
CCAGCGTTTTCCTT_CCCCAAGGCTAA
20._IMC_14
CCAGCGTTTT_TT_CCCCAAGGCTAA
21._GC-03-030-3-09
CCAGCGTTTT_TT_CCCCAAGGCTAA
22._GC-03-030-3-09
CCAGCGTTTT_TT_CCCCAAGGCTAA
23._IMC_14
CCAGCGTTTT_TT_CCCCAAGGCTAA
24._GC-03-030-3-09
CCAGCGTTTT_TT_CCCCAAGGCTAA
25._IMC_14
CCAGCGTTTT_TT_CCCCAAGGCTAA
26._RUQ_1634
__CG____GT_CC_GG_AA
27._IMC_14
CCAGCGTTTTCCTTGTCC_AAGGCTAA
28._RUQ_1634
_AGCGTT___GT____CTAA
29._RUQ_1634
CTAG_CTTTAACCTTCTCTAAAACTAG
30._GC-03-30-3-9
GGAGCGAAAACCAAAA__AAGGAGAA
31._RUQ_1634
GGAGCGAAAACCAAAA__AAGGAGAA
 1516171819202122232425262728
_Input profile
TTAAGGCCCCCCGGAACCAAGGGGCTCC
1._GC-03-030-3-09
TTAAGGCCCCCCGGAACCAAGGGGCTCC
2._GC-03-030-3-09
TTAAGGCCCCCCGGAACCAAGGGGCTCC
3._GC-03-030-3-09
TTAAGGCCCCCCGGAACCAAGGGGCTCC
4._GC-03-030-3-09
TTAAGGCCCCCCGGAACCAAGGGGCTCC
5._IMC_14
TTAAGGCCCCCCGGAACCAAGGGGCTCC
6._IMC_14
TTAAGGCCCCCCGGAACCAAGGGGCTCC
7._IMC_14
TTAAGGCCCCCCGGAACCAAGGGGCTCC
8._IMC_14
TTAAGGCCCCCCGGAACCAAGGGGCTCC
9._GC-04-054-3-18
TTAAGGCCCCCCGGAACCAAGGGGCTCC
10._GC-03-030-3-09
TTAAGGCCCCCCGG_CCAAGGGGCTCC
11._GC-03-030-3-09
TTAAGGCCCCCCGG_CCAAGGGGCTCC
12._IMC_14
TTAAGGCCCCCCGG_CCAAGGGGCTCC
13._IMC_14
TTAAGGCCCCCCGG_CCAAGGGGCTCC
14._IMC_14
TTAAGGCCCCCCGGAACCAAGGGGCTCC
15._IMC_14
TTAAGGCCCCCCGGAACCAAGGGGCTCC
16._GC-03-030-3-09
TTAAGGCCCCCCGGAACCAAGGGGCTCC
17._GC-03-030-3-09
TTAAGGCCCCCCGGAACCAAGGGGCTCC
18._IMC_14
TTAAGGCCCCCCGG_CCAAGGGGCTCC
19._GC-03-030-3-09
TTAAGGCCCCCCGG_CCAAGGGGCTCC
20._IMC_14
TTAAGGCCCCCCGG_CCAAGGGGCTCC
21._GC-03-030-3-09
TTAAGGCCCCCCGG_CCAAGGGGCTCC
22._GC-03-030-3-09
TTAAGGCCCCCCGG_CCAAGGGGCTCC
23._IMC_14
TTAAGGCCCCCCGG_CCAAGGGGCTCC
24._GC-03-030-3-09
_AAGGCCCCCCGG_CCAAGGGGCTCC
25._IMC_14
_AAGGCCCCCCGG_CCAAGGGGCTCC
26._RUQ_1634
_____CCGGAA_AAGG__CC
27._IMC_14
TTAAGGCCCCCCGGAACCAAGGGGCTCC
28._RUQ_1634
____CCCCGG_CCAAGGGGCTCC
29._RUQ_1634
CTAAGGTTCCGGGGAGCTCCCCTTCTCC
30._GC-03-30-3-9
AAAAGGGGGGGGCC_GGAAGGCC_CC
31._RUQ_1634
AAAAGGGGGGGGCC_GGAAGGCC_CC
 293031323334353637383940  
_Input profile
AAGGAATTAGCGAACTGTACTTGGX_XX_X
1._GC-03-030-3-09
AAGGAATTAGCGAACTGTACTTGGX_XX_X
2._GC-03-030-3-09
AAGGAATTAGCGAACTGTACTTGGX_XX_X
3._GC-03-030-3-09
AAGGAATTAGCGAACTGTACTTGGX_XX_X
4._GC-03-030-3-09
AAGGAATTAGCGAACTGTACTTGGX_XX_X
5._IMC_14
AAGGAATTAGCGAACTGTACTTGGX_XX_X
6._IMC_14
AAGGAATTAGCGAACTGTACTTGGX_XX_X
7._IMC_14
AAGGAATTAGCGAACTGTACTTGGX_XX_X
8._IMC_14
AAGGAATTAGCGAACTGTACTTGGX_XX_X
9._GC-04-054-3-18
AAGGAATTAGCGAACTGTACTTGGX_XX_X
10._GC-03-030-3-09
AAGGAATTAGCGAACTGTACTTGGX_XX_X
11._GC-03-030-3-09
AAGGAATTAGCGAACTGTACTTGGX_XX_X
12._IMC_14
AAGGAATTAGCGAACTGTACTTGGX_XX_X
13._IMC_14
AAGGAATTAGCGAACTGTACTTGGX_XX_X
14._IMC_14
AAGGAATTAGCGAACTGTACTTGGX_XX_X
15._IMC_14
AAGGAATTAGCGAACTGTACTTGGX_XX_X
16._GC-03-030-3-09
AAGGAATTAGCGAACTGTACTTGGX_XX_X
17._GC-03-030-3-09
AAGGAATTAGCGAACTGTACTTGGX_XX_X
18._IMC_14
AAGGAATTAGCGAACTGTACTTGGX_XX_X
19._GC-03-030-3-09
AAGGAATTAGCGAACTGTACTTGGX_XX_X
20._IMC_14
AAGGAATTAGCGAACTGTACTTGGX_XX_X
21._GC-03-030-3-09
AAGGAATTAGCGAACTGTACTTGGX_XX_X
22._GC-03-030-3-09
AAGGAATTAGCGAACTGTACTTGGX_XX_X
23._IMC_14
AAGGAATTAGCGAACTGTACTTGGX_XX_X
24._GC-03-030-3-09
AAGGAATTAGCGAACTGTACTTGGX_XX_X
25._IMC_14
AAGGAATTAGCGAACTGTACTTGGX_XX_X
26._RUQ_1634
____AG____AC__X_XX_X
27._IMC_14
AAGGAATTAG_ACCTGTACTTGGX_XX_X
28._RUQ_1634
AA_AATTAGCGACCTGTAC__X_XX_X
29._RUQ_1634
AGGGAACTAACCACCTGTCCTTGGX_XX_X
30._GC-03-30-3-9
_GGAAAAAGCGACAGACACTTGGX_XX_X
31._RUQ_1634
_GGAAAAAGCGACAGACACTTGGX_XX_X

Input profile: IMC_14

 
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Mars Center for Cocoa Science, Brazil
Location: 4318 4 > FP
 Dapeng Zhang, 2016

1._IMC_14 GC-03-030-3-09

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

2._IMC_14 GC-03-030-3-09

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

3._IMC_14 GC-03-030-3-09

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

4._IMC_14 GC-03-030-3-09

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

5._IMC_14

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

6._IMC_14

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 5
 Dapeng Zhang, 2016

7._IMC_14

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 9
 Dapeng Zhang, 2016

8._IMC_14

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 11
 Dapeng Zhang, 2016

9._IMC_14 GC-04-054-3-18

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

10._IMC_14 GC-03-030-3-09

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

11._IMC_14 GC-03-030-3-09

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

12._IMC_14

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 2
 Dapeng Zhang, 2016

13._IMC_14

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 3
 Dapeng Zhang, 2016

14._IMC_14

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 13
 Dapeng Zhang, 2016

15._IMC_14

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 16
 Dapeng Zhang, 2016

16._IMC_14 GC-03-030-3-09

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

17._IMC_14 GC-03-030-3-09

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

18._IMC_14

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 12
 Dapeng Zhang, 2016

19._IMC_14 GC-03-030-3-09

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

20._IMC_14

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 4
 Dapeng Zhang, 2016

21._IMC_14 GC-03-030-3-09

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

22._IMC_14 GC-03-030-3-09

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

23._IMC_14

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 6
 Dapeng Zhang, 2016

24._IMC_14 GC-03-030-3-09

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

25._IMC_14

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 10
 Dapeng Zhang, 2016

26._IMC_14 RUQ_1634

identical
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

27._IMC_14

98.7 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D600
 Dapeng Zhang, 2016

28._IMC_14 RUQ_1634

97.9 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

29._IMC_14 RUQ_1634

60.3 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

30._IMC_14 GC-03-30-3-9

52.9 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 3, Rep: 9, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

31._IMC_14 RUQ_1634

52.9 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25